I used a Navigator 5.4 as my donor. I didn't use Daves kit, I was working on mine at the same time he was developing his. I made adapter plates mount the pulley bridge on a stock navigator timing cover. Dave added the mounts directly to the cover. We went about it a little different, but the basic idea is the same.
You need to locate as much of the 03 Cobra pieces as possible. The toughest part was widening the intake, if you don't mind the extra height, you could use the 4.6/5.4 intake adapters instead.

Engine on stand

Engine assembly